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Supplementary material related to the following articles is available online:

From the Current Issue: 17 (9); [Table of Contents]

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From Past Issues:

Lora L. Burns-Hamuro, Yoshitomo Hamuro, Jack S. Kim, Paul Sigala, Rosa Fayos, David D. Stranz, Patricia A. Jennings, Susan S. Taylor, and Virgil L. Woods Jr.
Distinct interaction modes of an AKAP bound to two regulatory subunit isoforms of protein kinase A revealed by amide hydrogen/deuterium exchange
Protein Science 2005; 0(2005): ps.051687305v1-99999 [Abstract]  
Article supplement(s): [Supplemental Material] [Supplemental Research Data]

Igor Mochalkin, J. Richard Miller, Artem Evdokimov, Sandra Lightle, Chunhong Yan, Charles Ken Stover, and Grover L. Waldrop
Structural evidence for substrate-induced synergism and half-sites reactivity in biotin carboxylase
Protein Science 2008; 0(2008): ps.035584.108v1 [Abstract]  
Article supplement(s): [Supplemental Research Data]

Bryan F. Shaw, Gregory F. Schneider, Basar Bilgiçer, George K. Kaufman, John M. Neveu, William S. Lane, Julian P. Whitelegge, and George M. Whitesides
Lysine acetylation can generate highly charged enzymes with increased resistance toward irreversible inactivation
Protein Science 2008; 17(8): 1446-1455 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Carlo Camilloni, Ludovico Sutto, Davide Provasi, Guido Tiana, and Ricardo A. Broglia
Early events in protein folding: Is there something more than hydrophobic burst?
Protein Science 2008; 17(8): 1424-1433 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Rongzhen Zhang, Guangyu Zhu, Wenchi Zhang, Sheng Cao, Xianjin Ou, Xuemei Li, Mark Bartlam, Yan Xu, Xuejun C. Zhang, and Zihe Rao
Crystal structure of a carbonyl reductase from Candida parapsilosis with anti-Prelog stereospecificity
Protein Science 2008; 17(8): 1412-1423 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Ine M.J. Segers-Nolten, Micha M.M. Wilhelmus, Gertjan Veldhuis, Bart D. van Rooijen, Benjamin Drukarch, and Vinod Subramaniam
Tissue transglutaminase modulates {alpha}-synuclein oligomerization
Protein Science 2008; 17(8): 1395-1402 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Aysam Guerler and Ernst-Walter Knapp
Novel protein folds and their nonsequential structural analogs
Protein Science 2008; 17(8): 1374-1382 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Vasu Chandrasekaran, Chang Jun Lee, Robert E. Duke, Lalith Perera, and Lee G. Pedersen
Computational study of the putative active form of protein Z (PZa): Sequence design and structural modeling
Protein Science 2008; 17(8): 1354-1361 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Mark Adrian Brooks, Laurence Meslet-Cladiére, Marc Graille, Joëlle Kuhn, Karine Blondeau, Hannu Myllykallio, and Herman van Tilbeurgh
The structure of an archaeal homodimeric ligase which has RNA circularization activity
Protein Science 2008; 17(8): 1336-1345 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Anzor G. Gvritishvili, Alexey V. Gribenko, and George I. Makhatadze
Cooperativity of complex salt bridges
Protein Science 2008; 17(7): 1285-1290 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Arsen Petrovic, Colin T. Davis, Kaveri Rangachari, Barbara Clough, R.J.M. (Iain) Wilson, and John F. Eccleston
Hydrodynamic characterization of the SufBC and SufCD complexes and their interaction with fluorescent adenosine nucleotides
Protein Science 2008; 17(7): 1264-1274 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Melissa D. Boersma, Jack D. Sadowsky, York A. Tomita, and Samuel H. Gellman
Hydrophile scanning as a complement to alanine scanning for exploring and manipulating protein–protein recognition: Application to the Bim BH3 domain
Protein Science 2008; 17(7): 1232-1240 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Valentina Tereshko, Serdar Uysal, Akiko Koide, Katrina Margalef, Shohei Koide, and Anthony A. Kossiakoff
Toward chaperone-assisted crystallography: Protein engineering enhancement of crystal packing and X-ray phasing capabilities of a camelid single-domain antibody (VHH) scaffold
Protein Science 2008; 17(7): 1175-1187 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Sharmila Sivendran and Roberta F. Colman
Effect of a new non-cleavable substrate analog on wild-type and serine mutants in the signature sequence of adenylosuccinate lyase of Bacillus subtilis and Homo sapiens
Protein Science 2008; 17(7): 1162-1174 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Yumi N. Imai, Yoshihisa Inoue, Isao Nakanishi, and Kazuo Kitaura
Cl–{pi} interactions in protein–ligand complexes
Protein Science 2008; 17(7): 1129-1137 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Jennifer E. Dawson and Linda K. Nicholson
Folding kinetics and thermodynamics of Pseudomonas syringae effector protein AvrPto provide insight into translocation via the type III secretion system
Protein Science 2008; 17(7): 1109-1119 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Wei Deng, Aoneng Cao, and Luhua Lai
Distinguishing the cross-β spine arrangements in amyloid fibrils using FRET analysis
Protein Science 2008; 17(6): 1102-1105 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Karunakar Kar, Yuh-Hwa Wang, and Barbara Brodsky
Sequence dependence of kinetics and morphology of collagen model peptide self-assembly into higher order structures
Protein Science 2008; 17(6): 1086-1095 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Yoshiaki Urakubo, Teikichi Ikura, and Nobutoshi Ito
Crystal structural analysis of protein–protein interactions drastically destabilized by a single mutation
Protein Science 2008; 17(6): 1055-1065 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Benjamin Nicholson, Craig A. Leach, Seth J. Goldenberg, Dana M. Francis, Matthew P. Kodrasov, Xufan Tian, John Shanks, David E. Sterner, Alejandro Bernal, Michael R. Mattern, Keith D. Wilkinson, and Tauseef R. Butt
Characterization of ubiquitin and ubiquitin-like-protein isopeptidase activities
Protein Science 2008; 17(6): 1035-1043 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Pierre Montaville, Nicolas Coudevylle, Anand Radhakrishnan, Andrei Leonov, Markus Zweckstetter, and Stefan Becker
The PIP2 binding mode of the C2 domains of rabphilin-3A
Protein Science 2008; 17(6): 1025-1034 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Jiangxin Liu, Jiahai Zhang, Yinshan Yang, Hongda Huang, Weiqun Shen, Qi Hu, Xingsheng Wang, Jihui Wu, and Yunyu Shi
Conformational change upon ligand binding and dynamics of the PDZ domain from leukemia-associated Rho guanine nucleotide exchange factor
Protein Science 2008; 17(6): 1003-1014 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Per Larsson, Björn Wallner, Erik Lindahl, and Arne Elofsson
Using multiple templates to improve quality of homology models in automated homology modeling
Protein Science 2008; 17(6): 990-1002 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Michael A. Kron, Sam Cichanowicz, Angela Hendrick, Aizhuo Liu, Joseph Leykam, and Leslie A. Kuhn
Using structural analysis to generate parasite-selective monoclonal antibodies
Protein Science 2008; 17(6): 983-989 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Roberto Improta, Rita Berisio, and Luigi Vitagliano
Contribution of dipole–dipole interactions to the stability of the collagen triple helix
Protein Science 2008; 17(5): 955-961 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Daniel S. Weinstock, Chitra Narayanan, Jean Baum, and Ronald M. Levy
Correlation between 13C {alpha} chemical shifts and helix content of peptide ensembles
Protein Science 2008; 17(5): 950-954 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Leila R. Aminova, Shuhong Luo, Yuka Bannai, Mengfei Ho, and Brenda A. Wilson
The C3 domain of Pasteurella multocida toxin is the minimal domain responsible for activation of Gq-dependent calcium and mitogenic signaling
Protein Science 2008; 17(5): 945-949 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Krupakar Parthasarathy, Xin Lin, Suet Mien Tan, S.K. Alex Law, and Jaume Torres
Transmembrane helices that form two opposite homodimeric interactions: An asparagine scan study of {alpha}M and β2 integrins
Protein Science 2008; 17(5): 930-938 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Andrea Zen, Vincenzo Carnevale, Arthur M. Lesk, and Cristian Micheletti
Correspondences between low-energy modes in enzymes: Dynamics-based alignment of enzymatic functional families
Protein Science 2008; 17(5): 918-929 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Mohammad S. Yousef, Hironari Kamikubo, Mikio Kataoka, Ryuichi Kato, and Soichi Wakatsuki
Miranda cargo-binding domain forms an elongated coiled-coil homodimer in solution: Implications for asymmetric cell division in Drosophila
Protein Science 2008; 17(5): 908-917 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Robert C. Rivers, Janet R. Kumita, Gian Gaetano Tartaglia, Matthew M. Dedmon, Amol Pawar, Michele Vendruscolo, Christopher M. Dobson, and John Christodoulou
Molecular determinants of the aggregation behavior of {alpha}- and β-synuclein
Protein Science 2008; 17(5): 887-898 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Julie Ménétrey, Gilles Flatau, Patrice Boquet, André Ménez, and Enrico A. Stura
Structural basis for the NAD-hydrolysis mechanism and the ARTT-loop plasticity of C3 exoenzymes
Protein Science 2008; 17(5): 878-886 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Gaetano Malgieri and David Eliezer
Structural effects of Parkinson's disease linked DJ-1 mutations
Protein Science 2008; 17(5): 855-868 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Sarah F. Martin, Michael H. Tatham, Ronald T. Hay, and Ifor D.W. Samuel
Quantitative analysis of multi-protein interactions using FRET: Application to the SUMO pathway
Protein Science 2008; 17(4): 777-784 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Nenad Juranic, J.J. Dannenberg, Gabriel Cornilescu, Pedro Salvador, Elena Atanasova, Hee-Chul Ahn, Slobodan Macura, John L. Markley, and Franklyn G. Prendergast
Structural dependencies of protein backbone 2JNC' couplings
Protein Science 2008; 17(4): 768-776 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Jongchan Woo, Matthew H. Howell, and Albrecht G. von Arnim
Structure–function studies on the active site of the coelenterazine-dependent luciferase from Renilla
Protein Science 2008; 17(4): 725-735 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Dmitri Tolkatchev, Suneil Malik, Anna Vinogradova, Ping Wang, Zhigang Chen, Ping Xu, Hugh P.J. Bennett, Andrew Bateman, and Feng Ni
Structure dissection of human progranulin identifies well-folded granulin/epithelin modules with unique functional activities
Protein Science 2008; 17(4): 711-724 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Sergio Martinez Rodriguez, Santosh Panjikar, Karolien Van Belle, Lode Wyns, Joris Messens, and Remy Loris
Nonspecific base recognition mediated by water bridges and hydrophobic stacking in ribonuclease I from Escherichia coli
Protein Science 2008; 17(4): 681-690 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Daniel Martinez Molina, Tobias Cornvik, Said Eshaghi, Jesper Z. Haeggström, Pär Nordlund, and Marina Ignatushchenko Sabet
Engineering membrane protein overproduction in Escherichia coli
Protein Science 2008; 17(4): 673-680 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Patrick J. Farber and Anthony Mittermaier
Side chain burial and hydrophobic core packing in protein folding transition states
Protein Science 2008; 17(4): 644-651 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Maksymilian Chruszcz, Wojciech Potrzebowski, Matthew D. Zimmerman, Marek Grabowski, Heping Zheng, Piotr Lasota, and Wladek Minor
Analysis of solvent content and oligomeric states in protein crystals—does symmetry matter?
Protein Science 2008; 17(4): 623-632 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Richard R. Chapleau, Rebecca Blomberg, Peter C. Ford, and Martin Sagermann
Design of a highly specific and noninvasive biosensor suitable for real-time in vivo imaging of mercury (II) uptake
Protein Science 2008; 17(4): 614-622 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

José Salud Rodríguez-Zavala
Enhancement of coenzyme binding by a single point mutation at the coenzyme binding domain of E. coli lactaldehyde dehydrogenase
Protein Science 2008; 17(3): 563-570 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Mark A. Blenner and Scott Banta
Characterization of the 4D5Flu single-chain antibody with a stimulus-responsive elastin-like peptide linker: A potential reporter of peptide linker conformation
Protein Science 2008; 17(3): 527-536 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Masahiro Watanabe, Yumiko Mishima, Ichiro Yamashita, Sam-Yong Park, Jeremy R.H. Tame, and Jonathan G. Heddle
Intersubunit linker length as a modifier of protein stability: Crystal structures and thermostability of mutant TRAP
Protein Science 2008; 17(3): 518-526 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Magdalini Vamvouka, John Cieslak, Ned Van Eps, Wayne Hubbell, and Adrian Gross
The structure of the lipid-embedded potassium channel voltage sensor determined by double-electron–electron resonance spectroscopy
Protein Science 2008; 17(3): 506-517 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Amarda Shehu, Lydia E. Kavraki, and Cecilia Clementi
Unfolding the fold of cyclic cysteine-rich peptides
Protein Science 2008; 17(3): 482-493 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Simon Newstead, Sébastien Ferrandon, and So Iwata
Rationalizing {alpha}-helical membrane protein crystallization
Protein Science 2008; 17(3): 466-472 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Lucia Morstadt, Andrew Bohm, Deniz Yüksel, Krishna Kumar, B. David Stollar, and James D. Baleja
Engineering and characterization of a single chain surrogate light chain variable domain
Protein Science 2008; 17(3): 458-465 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Michael T. Henzl and John J. Tanner
Solution structure of Ca2+-free rat {alpha}-parvalbumin
Protein Science 2008; 17(3): 431-438 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Seiji Saito, Keiichi Yano, Shweta Sharma, Heather E. McMahon, and Shunichi Shimasaki
Characterization of the post-translational modification of recombinant human BMP-15 mature protein
Protein Science 2008; 17(2): 362-370 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Wenxu Tong, Ronald J. Williams, Ying Wei, Leonel F. Murga, Jaeju Ko, and Mary Jo Ondrechen
Enhanced performance in prediction of protein active sites with THEMATICS and support vector machines
Protein Science 2008; 17(2): 333-341 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Matthew R. Stump and Lisa M. Gloss
Unique fluorophores in the dimeric archaeal histones hMfB and hPyA1 reveal the impact of nonnative structure in a monomeric kinetic intermediate
Protein Science 2008; 17(2): 322-332 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Freddie R. Salsbury Jr, Stacy T. Knutson, Leslie B. Poole, and Jacquelyn S. Fetrow
Functional site profiling and electrostatic analysis of cysteines modifiable to cysteine sulfenic acid
Protein Science 2008; 17(2): 299-312 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Robert Renthal
Buried water molecules in helical transmembrane proteins
Protein Science 2008; 17(2): 293-298 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Takeshi Nakanishi, Kouhei Tsumoto, Akiko Yokota, Hidemasa Kondo, and Izumi Kumagai
Critical contribution of VH–VL interaction to reshaping of an antibody: The case of humanization of anti-lysozyme antibody, HyHEL-10
Protein Science 2008; 17(2): 261-270 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Zhefeng Guo, Duilio Cascio, Kálmán Hideg, and Wayne L. Hubbell
Structural determinants of nitroxide motion in spin-labeled proteins: Solvent-exposed sites in helix B of T4 lysozyme
Protein Science 2008; 17(2): 228-239 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Nicholas C. Fitzkee and Bertrand García-Moreno E
Electrostatic effects in unfolded staphylococcal nuclease
Protein Science 2008; 17(2): 216-227 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Matthew Devany, Ferdinand Kappes, Kuan-Ming Chen, David M. Markovitz, and Hiroshi Matsuo
Solution NMR structure of the N-terminal domain of the human DEK protein
Protein Science 2008; 17(2): 205-215 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Ying Li, Deborah A. Berthold, Robert B. Gennis, and Chad M. Rienstra
Chemical shift assignment of the transmembrane helices of DsbB, a 20-kDa integral membrane enzyme, by 3D magic-angle spinning NMR spectroscopy
Protein Science 2008; 17(2): 199-204 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Xuanjun Ai, Anthony Semesi, Adelinda Yee, Cheryl H. Arrowsmith, Wing-Yiu Choy, and Shawn S.C. Li
The hypothetical protein Atu4866 from Agrobacterium tumefaciens adopts a streptavidin-like fold
Protein Science 2008; 17(1): 154-158 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Miho Higurashi, Takashi Ishida, and Kengo Kinoshita
Identification of transient hub proteins and the possible structural basis for their multiple interactions
Protein Science 2008; 17(1): 72-78 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Naomi Courtemanche and Doug Barrick
Folding thermodynamics and kinetics of the leucine-rich repeat domain of the virulence factor Internalin B
Protein Science 2008; 17(1): 43-53 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Lidia Mosyak, Katy Georgiadis, Tania Shane, Kristine Svenson, Tracy Hebert, Thomas McDonagh, Stewart Mackie, Stephane Olland, Laura Lin, Xiaotian Zhong, Ronald Kriz, Erica L. Reifenberg, Lisa A. Collins-Racie, Christopher Corcoran, Bethany Freeman, Richard Zollner, Tod Marvell, Matthew Vera, Phaik-Eng Sum, Edward R. Lavallie, Mark Stahl, and William Somers
Crystal structures of the two major aggrecan degrading enzymes, ADAMTS4 and ADAMTS5
Protein Science 2008; 17(1): 16-21 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Alexander K. Berg, Sumathra Manokaran, Daniel Eiler, Joel Kooren, Sanku Mallik, and D.K. Srivastava
Energetic rationale for an unexpected and abrupt reversal of guanidinium chloride-induced unfolding of peptide deformylase
Protein Science 2008; 17(1): 11-15 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Po-Ssu Huang, John J. Love, and Stephen L. Mayo
A de novo designed protein–protein interface
Protein Science 2007; 16(12): 2770-2774 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Ludovic Carlier, Joël Couprie, Albane le Maire, Laure Guilhaudis, Isabelle Milazzo-Segalas, Marie Courçon, Mireille Moutiez, Muriel Gondry, Daniel Davoust, Bernard Gilquin, and Sophie Zinn-Justin
Solution structure of the region 51–160 of human KIN17 reveals an atypical winged helix domain
Protein Science 2007; 16(12): 2750-2755 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Xavier Tadeo, David Castaño, and Oscar Millet
Anion modulation of the 1H/2H exchange rates in backbone amide protons monitored by NMR spectroscopy
Protein Science 2007; 16(12): 2733-2740 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Andrew J. McCluskey, Gregory M.K. Poon, and Jean Gariépy
A rapid and universal tandem-purification strategy for recombinant proteins
Protein Science 2007; 16(12): 2726-2732 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Xiaokun Shu, Pavel Leiderman, Rinat Gepshtein, Nicholas R. Smith, Karen Kallio, Dan Huppert, and S. James Remington
An alternative excited-state proton transfer pathway in green fluorescent protein variant S205V
Protein Science 2007; 16(12): 2703-2710 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Katrina L. Schweiker, Arash Zarrine-Afsar, Alan R. Davidson, and George I. Makhatadze
Computational design of the Fyn SH3 domain with increased stability through optimization of surface charge–charge interactions
Protein Science 2007; 16(12): 2694-2702 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Ryan Schulz, Yian-Biao Zhang, Chang-Jun Liu, and Paul Freimuth
Thiamine diphosphate binds to intermediates in the assembly of adenovirus fiber knob trimers in Escherichia coli
Protein Science 2007; 16(12): 2684-2693 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Nathan T. Ross and Benjamin L. Miller
Characterization of the binding surface of the translocated intimin receptor, an essential protein for EPEC and EHEC cell adhesion
Protein Science 2007; 16(12): 2677-2683 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Georgios Psakis, Sandra Nitschkowski, Caterina Holz, Daniel Kreß, Manuel Maestre-Reyna, Julia Polaczek, Gerd Illing, and Lars-Oliver Essen
Expression screening of integral membrane proteins from Helicobacter pylori 26695
Protein Science 2007; 16(12): 2667-2676 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Igor Mochalkin, Sandra Lightle, Yaqi Zhu, Jeffrey F. Ohren, Cindy Spessard, Nickolay Y. Chirgadze, Craig Banotai, Michael Melnick, and Laura McDowell
Characterization of substrate binding and catalysis in the potential antibacterial target N-acetylglucosamine-1-phosphate uridyltransferase (GlmU)
Protein Science 2007; 16(12): 2657-2666 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Artem Y. Lyubimov, Kathryn Heard, Hui Tang, Nicole S. Sampson, and Alice Vrielink
Distortion of flavin geometry is linked to ligand binding in cholesterol oxidase
Protein Science 2007; 16(12): 2647-2656 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Scott T. Lefurgy, René M. de Jong, and Virginia W. Cornish
Saturation mutagenesis of Asn152 reveals a substrate selectivity switch in P99 cephalosporinase
Protein Science 2007; 16(12): 2636-2646 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Michal Hammel, Daniel Nemecek, J. Andrew Keightley, George J. Thomas Jr, and Brian V. Geisbrecht
The Staphylococcus aureus extracellular adherence protein (Eap) adopts an elongated but structured conformation in solution
Protein Science 2007; 16(12): 2605-2617 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Fred P. Davis, David T. Barkan, Narayanan Eswar, James H. McKerrow, and Andrej Sali
Host–pathogen protein interactions predicted by comparative modeling
Protein Science 2007; 16(12): 2585-2596 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Andrei Y. Istomin, Donald J. Jacobs, and Dennis R. Livesay
On the role of structural class of a protein with two-state folding kinetics in determining correlations between its size, topology, and folding rate
Protein Science 2007; 16(11): 2564-2569 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Haydyn D.T. Mertens, Judy M. Callaghan, James D. Swarbrick, Malcolm J. McConville, and Paul R. Gooley
A high-resolution solution structure of a trypanosomatid FYVE domain
Protein Science 2007; 16(11): 2552-2559 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Sehat Nauli, Saman Farr, Yueh-Jung Lee, Hye-Yeon Kim, Salem Faham, and James U. Bowie
Polymer-driven crystallization
Protein Science 2007; 16(11): 2542-2551 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Chris Gall, Hanyu Xu, Anne Brickenden, Xuanjun Ai, and Wing Yiu Choy
The intrinsically disordered TC-1 interacts with Chibby via regions with high helical propensity
Protein Science 2007; 16(11): 2510-2518 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Liping Yu, Chaohong Sun, Renaldo Mendoza, Jie Wang, Edmund D. Matayoshi, Eric Hebert, Ana Pereda-Lopez, Philip J. Hajduk, and Edward T. Olejniczak
Solution structure and calcium-binding properties of EF-hands 3 and 4 of calsenilin
Protein Science 2007; 16(11): 2502-2509 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Ivan I. Vorontsov, George Minasov, Joseph S. Brunzelle, Ludmilla Shuvalova, Olga Kiryukhina, Frank R. Collart, and Wayne F. Anderson
Crystal structure of an apo form of Shigella flexneri ArsH protein with an NADPH-dependent FMN reductase activity
Protein Science 2007; 16(11): 2483-2490 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Steven T. Runyon, Yingnan Zhang, Brent A. Appleton, Stephen L. Sazinsky, Ping Wu, Borlan Pan, Christian Wiesmann, Nicholas J. Skelton, and Sachdev S. Sidhu
Structural and functional analysis of the PDZ domains of human HtrA1 and HtrA3
Protein Science 2007; 16(11): 2454-2471 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Lu Liu, Nicole Mushero, Lizbeth Hedstrom, and Anne Gershenson
Short-lived protease–serpin complexes: Partial disruption of the rat trypsin active site
Protein Science 2007; 16(11): 2403-2411 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Heather K. Lamb, Paul Thompson, Catherine Elliott, Ian G. Charles, Jamie Richards, Michael Lockyer, Nicholas Watkins, Charles Nichols, David K. Stammers, Clive R. Bagshaw, Alan Cooper, and Alastair R. Hawkins
Functional analysis of the GTPases EngA and YhbZ encoded by Salmonella typhimurium
Protein Science 2007; 16(11): 2391-2402 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Terry J. Amiss, Douglas B. Sherman, Colleen M. Nycz, Sandra A. Andaluz, and J. Bruce Pitner
Engineering and rapid selection of a low-affinity glucose/galactose-binding protein for a glucose biosensor
Protein Science 2007; 16(11): 2350-2359 [Abstract] [Full Text]  
Article supplement(s): [Correction]

Shadi Abu-Baker, Jun-Xia Lu, Shidong Chu, Kiran K. Shetty, Peter L. Gor'kov, and Gary A. Lorigan
The structural topology of wild-type phospholamban in oriented lipid bilayers using 15N solid-state NMR spectroscopy
Protein Science 2007; 16(11): 2345-2349 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Isabell R. Loftin, Sylvia Franke, Ninian J. Blackburn, and Megan M. McEvoy
Unusual Cu(I)/Ag(I) coordination of Escherichia coli CusF as revealed by atomic resolution crystallography and X-ray absorption spectroscopy
Protein Science 2007; 16(10): 2287-2293 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Esther León, Adelinda Yee, Angel R. Ortíz, Jorge Santoro, Manuel Rico, and M. Angeles Jiménez
Solution structure of the hypothetical protein TA0095 from Thermoplasma acidophilum: A novel superfamily with a two-layer sandwich architecture
Protein Science 2007; 16(10): 2278-2286 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Tamir Tuller, Benny Chor, and Nathan Nelson
Forbidden penta-peptides
Protein Science 2007; 16(10): 2251-2259 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

James E. Fitzgerald, Abhishek K. Jha, Andres Colubri, Tobin R. Sosnick, and Karl F. Freed
Reduced Cbeta statistical potentials can outperform all-atom potentials in decoy identification
Protein Science 2007; 16(10): 2123-2139 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Oleg Y. Dmitriev and Robert H. Fillingame
The rigid connecting loop stabilizes hairpin folding of the two helices of the ATP synthase subunit c
Protein Science 2007; 16(10): 2118-2122 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Seung-Wook Chi, Do-Hyoung Kim, Si-Hyung Lee, Iksoo Chang, and Kyou-Hoon Han
Pre-structured motifs in the natively unstructured preS1 surface antigen of hepatitis B virus
Protein Science 2007; 16(10): 2108-2117 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Viktor Y. Alekseyev, Corey W. Liu, David E. Cane, Joseph D. Puglisi, and Chaitan Khosla
Solution structure and proposed domain–domain recognition interface of an acyl carrier protein domain from a modular polyketide synthase
Protein Science 2007; 16(10): 2093-2107 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Sudarshan Rajagopal and Stephen B.H. Kent
Total chemical synthesis and biophysical characterization of the minimal isoform of the KChIP2 potassium channel regulatory subunit
Protein Science 2007; 16(9): 2056-2064 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Emanuel Wyler, Monika Kaminska, Yves-Marie Coïc, Françoise Baleux, Michel Véron, and Fabrice Agou
Inhibition of NF-{kappa}B activation with designed ankyrin-repeat proteins targeting the ubiquitin-binding/oligomerization domain of NEMO
Protein Science 2007; 16(9): 2013-2022 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Monica Ritco-Vonsovici, Abdessamad Ababou, and Michael Horton
Molecular plasticity of beta-catenin: New insights from single-molecule measurements and MD simulation
Protein Science 2007; 16(9): 1984-1998 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Michael T. Henzl and John J. Tanner
Solution structure of Ca2+-free rat beta-parvalbumin (oncomodulin)
Protein Science 2007; 16(9): 1914-1926 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Martin Graña, Ahmed Haouz, Alejandro Buschiazzo, Isabelle Miras, Annemarie Wehenkel, Vincent Bondet, William Shepard, Francis Schaeffer, Stewart T. Cole, and Pedro M. Alzari
The crystal structure of M. leprae ML2640c defines a large family of putative S-adenosylmethionine-dependent methyltransferases in mycobacteria
Protein Science 2007; 16(9): 1896-1904 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Richard A. Goldstein
Amino-acid interactions in psychrophiles, mesophiles, thermophiles, and hyperthermophiles: Insights from the quasi-chemical approximation
Protein Science 2007; 16(9): 1887-1895 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Jason DeChancie, Fernando R. Clemente, Adam J.T. Smith, Hakan Gunaydin, Yi-Lei Zhao, Xiyun Zhang, and K.N. Houk
How similar are enzyme active site geometries derived from quantum mechanical theozymes to crystal structures of enzyme-inhibitor complexes? Implications for enzyme design
Protein Science 2007; 16(9): 1851-1866 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Je-Hyun Baek, Hana Im, Un-Beom Kang, Ki Moon Seong, Cheolju Lee, Joon Kim, and Myeong-Hee Yu
Probing the local conformational change of {alpha}1-antitrypsin
Protein Science 2007; 16(9): 1842-1850 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Jamil S. Saad, Andrew Kim, Ruba H. Ghanam, Amanda K. Dalton, Volker M. Vogt, Zhibin Wu, Wuyuan Lu, and Michael F. Summers
Mutations that mimic phosphorylation of the HIV-1 matrix protein do not perturb the myristyl switch
Protein Science 2007; 16(8): 1793-1797 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Yukiko Doi-Katayama, Fumiaki Hayashi, Makoto Inoue, Takashi Yabuki, Masaaki Aoki, Eiko Seki, Takayoshi Matsuda, Takanori Kigawa, Mayumi Yoshida, Mikako Shirouzu, Takaho Terada, Yoshihide Hayashizaki, Shigeyuki Yokoyama, and Hiroshi Hirota
Solution structure of the general transcription factor 2I domain in mouse TFII-I protein
Protein Science 2007; 16(8): 1788-1792 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Martina Andberg, Jussi Jäntti, Sara Heilimo, Päivi Pihkala, Arja Paananen, Ari M.P. Koskinen, Hans Söderlund, and Markus B. Linder
Cleavage of recombinant proteins at poly-His sequences by Co(II) and Cu(II)
Protein Science 2007; 16(8): 1751-1761 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Timothy O. Street, Nicholas C. Fitzkee, Lauren L. Perskie, and George D. Rose
Physical-chemical determinants of turn conformations in globular proteins
Protein Science 2007; 16(8): 1720-1727 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Eduardo Henrique Silva Sousa, Jason Robert Tuckerman, Gonzalo Gonzalez, and Marie-Alda Gilles-Gonzalez
DosT and DevS are oxygen-switched kinases in Mycobacterium tuberculosis
Protein Science 2007; 16(8): 1708-1719 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Sharmila Sivendran, Mark L. Segall, Pumtiwitt C. Rancy, and Roberta F. Colman
Effect of Asp69 and Arg310 on the pK of His68, a key catalytic residue of adenylosuccinate lyase
Protein Science 2007; 16(8): 1700-1707 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Monika Oberer, Klaus Zangger, Karl Gruber, and Walter Keller
The solution structure of ParD, the antidote of the ParDE toxin–antitoxin module, provides the structural basis for DNA and toxin binding
Protein Science 2007; 16(8): 1676-1688 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Donghan Lee, Joseph D. Walsh, Molly Migliorini, Ping Yu, Tao Cai, Charles D. Schwieters, Susan Krueger, Dudley K. Strickland, and Yun-Xing Wang
The structure of receptor-associated protein (RAP)
Protein Science 2007; 16(8): 1628-1640 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Marc Fasnacht, Jiang Zhu, and Barry Honig
Local quality assessment in homology models using statistical potentials and support vector machines
Protein Science 2007; 16(8): 1557-1568 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Oliver Braun, Markus Knipp, Serge Chesnov, and Milan Vasák
Specific reactions of S-nitrosothiols with cysteine hydrolases: A comparative study between dimethylargininase-1 and CTP synthetase
Protein Science 2007; 16(8): 1522-1534 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Aiwu Zhou
Functional structure of the somatomedin B domain of vitronectin
Protein Science 2007; 16(7): 1502-1508 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Ruth L. Saxl, Gladys F. Maley, Charles R. Hauer, Robert Maccoll, Liming Changchien, and Frank Maley
Significance of mutations on the structural perturbation of thymidylate synthase: Implications for their involvement in subunit exchange
Protein Science 2007; 16(7): 1439-1448 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Aaron A. Puhl, Robert J. Gruninger, Ralf Greiner, Timothy W. Janzen, Steven C. Mosimann, and L. Brent Selinger
Kinetic and structural analysis of a bacterial protein tyrosine phosphatase-like myo-inositol polyphosphatase
Protein Science 2007; 16(7): 1368-1378 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

John H. Missimer, Michel O. Steinmetz, Riccardo Baron, Fritz K. Winkler, Richard A. Kammerer, Xavier Daura, and Wilfred F. van Gunsteren
Configurational entropy elucidates the role of salt-bridge networks in protein thermostability
Protein Science 2007; 16(7): 1349-1359 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Nenad Juranic, Elena Atanasova, John H. Streiff, Slobodan Macura, and Franklyn G. Prendergast
Solvent-induced differentiation of protein backbone hydrogen bonds in calmodulin
Protein Science 2007; 16(7): 1329-1337 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Trevor Huyton and Cynthia Wolberger
The crystal structure of the tumor suppressor protein pp32 (Anp32a): Structural insights into Anp32 family of proteins
Protein Science 2007; 16(7): 1308-1315 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Christoph Hartmann, Iris Antes, and Thomas Lengauer
IRECS: A new algorithm for the selection of most probable ensembles of side-chain conformations in protein models
Protein Science 2007; 16(7): 1294-1307 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Michael H. Godsey, George Minasov, Ludmilla Shuvalova, Joseph S. Brunzelle, Ivan I. Vorontsov, Frank R. Collart, and Wayne F. Anderson
The 2.2 Å resolution crystal structure of Bacillus cereus Nif3-family protein YqfO reveals a conserved dimetal-binding motif and a regulatory domain
Protein Science 2007; 16(7): 1285-1293 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Vincenzo De Filippis, Annamaria Draghi, Roberta Frasson, Claudio Grandi, Valeria Musi, Angelo Fontana, and Annalisa Pastore
o-Nitrotyrosine and p-iodophenylalanine as spectroscopic probes for structural characterization of SH3 complexes
Protein Science 2007; 16(7): 1257-1265 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

John W. Blankenship and Philip E. Dawson
Threading a peptide through a peptide: Protein loops, rotaxanes, and knots
Protein Science 2007; 16(7): 1249-1256 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Clare J. McCleverty, Diane C. Lin, and Robert C. Liddington
Structure of the PTB domain of tensin1 and a model for its recruitment to fibrillar adhesions
Protein Science 2007; 16(6): 1223-1229 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Carol L. Ladner, Raymond J. Turner, and Robert A. Edwards
Development of indole chemistry to label tryptophan residues in protein for determination of tryptophan surface accessibility
Protein Science 2007; 16(6): 1204-1213 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Liang Zhang, Weizhi Liu, Jianfeng Xiao, Tiancen Hu, Jing Chen, Kaixian Chen, Hualiang Jiang, and Xu Shen
Malonyl-CoA: acyl carrier protein transacylase from Helicobacter pylori: Crystal structure and its interaction with acyl carrier protein
Protein Science 2007; 16(6): 1184-1192 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Ilja V. Khavrutskii, Daniel J. Price, Jinhyuk Lee, and Charles L. Brooks III
Conformational change of the methionine 20 loop of Escherichia coli dihydrofolate reductase modulates pKa of the bound dihydrofolate
Protein Science 2007; 16(6): 1087-1100 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Zhefeng Guo, Duilio Cascio, Kálmán Hideg, Támás Kálái, and Wayne L. Hubbell
Structural determinants of nitroxide motion in spin-labeled proteins: Tertiary contact and solvent-inaccessible sites in helix G of T4 lysozyme
Protein Science 2007; 16(6): 1069-1086 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

N. Divya, E. Grifith, and Narendra Narayana
Structure of the Q67H mutant of R67 dihydrofolate reductase-NADP+ complex reveals a novel cofactor binding mode
Protein Science 2007; 16(6): 1063-1068 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Quan Chen, Xiaogang Niu, Yingqi Xu, Jihui Wu, and Yunyu Shi
Solution structure and backbone dynamics of the AF-6 PDZ domain/Bcr peptide complex
Protein Science 2007; 16(6): 1053-1062 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

M. Jack Borrok, Laura L. Kiessling, and Katrina T. Forest
Conformational changes of glucose/galactose-binding protein illuminated by open, unliganded, and ultra-high-resolution ligand-bound structures
Protein Science 2007; 16(6): 1032-1041 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Lingdi Zhang, Jingping Shen, Michael T. Guarnieri, Annie Heroux, Kui Yang, and Rui Zhao
Crystal structure of the C-terminal domain of splicing factor Prp8 carrying retinitis pigmentosa mutants
Protein Science 2007; 16(6): 1024-1031 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Timothy S. Priddy, E. Shane Price, Carey K. Johnson, and Gerald M. Carlson
Single molecule analyses of the conformational substates of calmodulin bound to the phosphorylase kinase complex
Protein Science 2007; 16(6): 1017-1023 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Eva-Maria Strauch and George Georgiou
A bacterial two-hybrid system based on the twin-arginine transporter pathway of E. coli
Protein Science 2007; 16(5): 1001-1008 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Nese Sari, Yanan He, Victoria Doseeva, Karen Surabian, Jayanthi Ramprakash, Fred Schwarz, Osnat Herzberg, and John Orban
Solution structure of HI1506, a novel two-domain protein from Haemophilus influenzae
Protein Science 2007; 16(5): 977-982 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Jing Liang, Jin Ryoun Kim, Jason T. Boock, Thomas J. Mansell, and Marc Ostermeier
Ligand binding and allostery can emerge simultaneously
Protein Science 2007; 16(5): 929-937 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Cheng-Hsilin Hsieh, San-Yuan Huang, Yu-Ching Wu, Li-Fan Liu, Chau-Chung Han, Yi-Chen Liu, and Ming F. Tam
Expression of proteins with dimethylarginines in Escherichia coli for protein–protein interaction studies
Protein Science 2007; 16(5): 919-928 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Shahin Zibaee, O. Sumner Makin, Michel Goedert, and Louise C. Serpell
A simple algorithm locates beta-strands in the amyloid fibril core of {alpha}-synuclein, Abeta, and tau using the amino acid sequence alone
Protein Science 2007; 16(5): 906-918 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data] [Correction]

Jane A. Knappenberger and Juliette T.J. Lecomte
Loop anchor modification causes the population of an alternative native state in an SH3-like domain
Protein Science 2007; 16(5): 863-879 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Ming Xu, Victor A. Shashilov, Vladimir V. Ermolenkov, Laura Fredriksen, Dmitri Zagorevski, and Igor K. Lednev
The first step of hen egg white lysozyme fibrillation, irreversible partial unfolding, is a two-state transition
Protein Science 2007; 16(5): 815-832 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Jikui Song, Kate Qin Zhao, Carrie L. Loushin Newman, Dmitriy A. Vinarov, and John L. Markley
Solution structure of human sorting nexin 22
Protein Science 2007; 16(5): 807-814 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Alexander E. Aleshin, Sergey A. Shiryaev, Alex Y. Strongin, and Robert C. Liddington
Structural evidence for regulation and specificity of flaviviral proteases and evolution of the Flaviviridae fold
Protein Science 2007; 16(5): 795-806 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Liliane Mouawad, Catherine Tetreau, Safwat Abdel-Azeim, David Perahia, and Daniel Lavalette
CO migration pathways in cytochrome P450cam studied by molecular dynamics simulations
Protein Science 2007; 16(5): 781-794 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Diana E. Wetzler, Eduardo M. Castaño, and Gonzalo de Prat-Gay
A quasi-spontaneous amyloid route in a DNA binding gene regulatory domain: The papillomavirus HPV16 E2 protein
Protein Science 2007; 16(4): 744-754 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Jonathan M. Elkins, Evangelos Papagrigoriou, Georgina Berridge, Xiaowen Yang, Claire Phillips, Carina Gileadi, Pavel Savitsky, and Declan A. Doyle
Structure of PICK1 and other PDZ domains obtained with the help of self-binding C-terminal extensions
Protein Science 2007; 16(4): 683-694 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Michael Hulko, Andrei N. Lupas, and Jörg Martin
Inherent chaperone-like activity of aspartic proteases reveals a distant evolutionary relation to double-{psi} barrel domains of AAA-ATPases
Protein Science 2007; 16(4): 644-653 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Jan Stout, Gonzalez Van Driessche, Savvas N. Savvides, and Jozef Van Beeumen
X-ray crystallographic analysis of the sulfur carrier protein SoxY from Chlorobium limicola f. thiosulfatophilum reveals a tetrameric structure
Protein Science 2007; 16(4): 589-601 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Elizabeth M. Vogel and Barbara Imperiali
Semisynthesis of unnatural amino acid mutants of paxillin: Protein probes for cell migration studies
Protein Science 2007; 16(3): 550-556 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Stéphane Mouilleron and Béatrice Golinelli-Pimpaneau
Domain motions of glucosamine-6P synthase: Comparison of the anisotropic displacements in the crystals and the catalytic hinge-bending rotation
Protein Science 2007; 16(3): 485-493 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Marco Kliemannel, Ralph Golbik, Rainer Rudolph, Elisabeth Schwarz, and Hauke Lilie
The pro-peptide of proNGF: Structure formation and intramolecular association with NGF
Protein Science 2007; 16(3): 411-419 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

J. Colin Cox, Janel Lape, Mahmood A. Sayed, and Homme W. Hellinga
Protein fabrication automation
Protein Science 2007; 16(3): 379-390 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Bryan C. Dickinson, Ranjani Varadan, and David Fushman
Effects of cyclization on conformational dynamics and binding properties of Lys48-linked di-ubiquitin
Protein Science 2007; 16(3): 369-378 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Franc Avbelj and Simona Golic Grdadolnik
Electrostatic screening and backbone preferences of amino acid residues in urea-denatured ubiquitin
Protein Science 2007; 16(2): 273-284 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Julie A. Hoy, Benoit J. Smagghe, Puspita Halder, and Mark S. Hargrove
Covalent heme attachment in Synechocystis hemoglobin is required to prevent ferrous heme dissociation
Protein Science 2007; 16(2): 250-260 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Qinghua Wang, Matthew A. Deloia, Yang Kang, Casey Litchke, Naixia Zhang, Margaret A. Titus, and Kylie J. Walters
The SH3 domain of a M7 interacts with its C-terminal proline-rich region
Protein Science 2007; 16(2): 189-196 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Robert G. Garces, Wanda Gillon, and Emil F. Pai
Atomic model of human Rcd-1 reveals an armadillo-like-repeat protein with in vitro nucleic acid binding properties
Protein Science 2007; 16(2): 176-188 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Jessica A. Williamson and Andrew D. Miranker
Direct detection of transient {alpha}-helical states in islet amyloid polypeptide
Protein Science 2007; 16(1): 110-117 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Jon C.D. Houtman, Patrick H. Brown, Brent Bowden, Hiroshi Yamaguchi, Ettore Appella, Lawrence E. Samelson, and Peter Schuck
Studying multisite binary and ternary protein interactions by global analysis of isothermal titration calorimetry data in SEDPHAT: Application to adaptor protein complexes in cell signaling
Protein Science 2007; 16(1): 30-42 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Vicky Doan-Nguyen and J. Patrick Loria
The effects of cosolutes on protein dynamics: The reversal of denaturant-induced protein fluctuations by trimethylamine N-oxide
Protein Science 2007; 16(1): 20-29 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data] [Supplemental Research Data]

Saikat Chakrabarti and Christopher J. Lanczycki
Analysis and prediction of functionally important sites in proteins
Protein Science 2007; 16(1): 4-13 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Joseph A. Marsh, Vinay K. Singh, Zongchao Jia, and Julie D. Forman-Kay
Sensitivity of secondary structure propensities to sequence differences between {alpha}- and {gamma}-synuclein: Implications for fibrillation
Protein Science 2006; 15(12): 2795-2804 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Shenggen Yao, Ming S. Liu, Seth L. Masters, Jian-Guo Zhang, Jeffrey J. Babon, Nicos A. Nicola, Sandra E. Nicholson, and Raymond S. Norton
Dynamics of the SPRY domain–containing SOCS box protein 2: Flexibility of key functional loops
Protein Science 2006; 15(12): 2761-2772 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Agnieszka Szyk, Zhibin Wu, Kenneth Tucker, De Yang, Wuyuan Lu, and Jacek Lubkowski
Crystal structures of human {alpha}-defensins HNP4, HD5, and HD6
Protein Science 2006; 15(12): 2749-2760 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Daniel Trzesniak and Wilfred F. van Gunsteren
Catalytic mechanism of cyclophilin as observed in molecular dynamics simulations: Pathway prediction and reconciliation of X-ray crystallographic and NMR solution data
Protein Science 2006; 15(11): 2544-2551 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

David Talavera, Antonio Morreale, Tim Meyer, Adam Hospital, Carles Ferrer-Costa, Josep Lluis Gelpi, Xavier de la Cruz, Robert Soliva, F. Javier Luque, and Modesto Orozco
A fast method for the determination of fractional contributions to solvation in proteins
Protein Science 2006; 15(11): 2525-2533 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Zsolt Keresztessy, Éva Csosz, Jolán Hársfalvi, Krisztián Csomós, Joe Gray, Robert N. Lightowlers, Jeremy H. Lakey, Zoltán Balajthy, and László Fésüs
Phage display selection of efficient glutamine-donor substrate peptides for transglutaminase 2
Protein Science 2006; 15(11): 2466-2480 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Laurent Volpon, Christopher R. Young, Allan Matte, and Kalle Gehring
NMR structure of the enzyme GatB of the galactitol-specific phosphoenolpyruvate-dependent phosphotransferase system and its interaction with GatA
Protein Science 2006; 15(10): 2435-2441 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

David D. Weis, Peter Kjellen, Bartholomew M. Sefton, and John R. Engen
Altered dynamics in Lck SH3 upon binding to the LBD1 domain of Herpesvirus saimiri Tip
Protein Science 2006; 15(10): 2402-2410 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Research Data]

Dmitri Tolkatchev, Rustem Shaykhutdinov, Ping Xu, Josée Plamondon, David C. Watson, N. Martin Young, and Feng Ni
Three-dimensional s